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fix: honor discovery-mode CLI options

#17

Merged glennmichael123 wants to merge codex/issue-2-discovery-cli into main

10 files +192 -24

f895b9e4df fix: honor supported discovery CLI options glennmichael123 review this step
2340b1a7f0 test: cover discovery filtering end to end glennmichael123 review this step
458dba5a4d test: remove scheduler timing from timeout extension glennmichael123 review this step